Index

_

_cardinal (exatomic.exa.core.numerical.BaseDataFrame attribute) _categories (exatomic.exa.core.numerical.BaseDataFrame attribute) _columns (exatomic.exa.core.numerical.BaseDataFrame attribute) _iname (exatomic.exa.core.numerical.BaseSeries attribute)

_index (exatomic.exa.core.numerical.BaseDataFrame attribute) _itype (exatomic.exa.core.numerical.BaseSeries attribute) _sname (exatomic.exa.core.numerical.BaseSeries attribute) _stype (exatomic.exa.core.numerical.BaseSeries attribute)

A

absolute_squared_displacement() (in module exatomic.algorithms.displacement) activate() (exatomic.widgets.widget_utils.Folder method) active() (exatomic.widgets.widget_base.ExatomicBox method) active_orbitals() (exatomic.core.orbital.Orbital method) active_scene_indices (exatomic.widgets.widget_base.ExatomicBox attribute) add_density() (in module exatomic.algorithms.orbital) add_field() (exatomic.core.universe.Universe method) add_molecular_orbitals() (exatomic.core.universe.Universe method) (in module exatomic.algorithms.orbital) add_orb() (exatomic.molcas.output.Output method) add_orb_ang_mom() (in module exatomic.algorithms.orbital) add_overlap() (exatomic.molcas.output.Output method) add_tensor() (in module exatomic.core.tensor) add_vibrational_mode() (in module exatomic.core.atom) ADF (class in exatomic.adf.output) align_to_axis() (exatomic.core.atom.Atom method) AMS (class in exatomic.adf.output) angles() (in module exatomic.algorithms.angles) append() (exatomic.exa.core.editor.Editor method) as_df() (in module exatomic.exa.util.isotopes) as_string() (exatomic.formula.SimpleFormula method) Atom (class in exatomic.core.atom) atom (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.adf.tape21.Tape21 property) (exatomic.adf.tape21.Tape21Meta attribute) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.interfaces.cube.Cube property) (exatomic.interfaces.cube.Meta attribute) (exatomic.interfaces.xyz.Meta attribute) (exatomic.interfaces.xyz.XYZ property) (exatomic.molcas.output.HDF property) (exatomic.molcas.output.HDFMeta attribute) (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) (exatomic.nbo.inputs.InpMeta attribute) (exatomic.nbo.inputs.Input property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute)

atom_3d (exatomic.widgets.widget_base.UniverseScene attribute) atom_c (exatomic.widgets.widget_base.UniverseScene attribute) atom_cr (exatomic.widgets.widget_base.UniverseScene attribute) atom_l (exatomic.widgets.widget_base.UniverseScene attribute) atom_s (exatomic.widgets.widget_base.UniverseScene attribute) atom_traits() (in module exatomic.widgets.traits) atom_two (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) atom_vr (exatomic.widgets.widget_base.UniverseScene attribute) atom_x (exatomic.widgets.widget_base.UniverseScene attribute) atom_y (exatomic.widgets.widget_base.UniverseScene attribute) atom_z (exatomic.widgets.widget_base.UniverseScene attribute) AtomicException AtomicField (class in exatomic.core.field) AtomTwo (class in exatomic.core.two) avg_grad (exatomic.core.gradient.Gradient property) axis (exatomic.widgets.widget_base.UniverseScene attribute)

B

BaseDataFrame (class in exatomic.exa.core.numerical) BaseSeries (class in exatomic.exa.core.numerical) basis_dims (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) basis_function_contributions() (in module exatomic.core.universe) basis_functions (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) basis_set (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.HDF property) (exatomic.molcas.output.HDFMeta attribute) (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute)

basis_set_order (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.HDF property) (exatomic.molcas.output.HDFMeta attribute) (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) (exatomic.nbo.inputs.InpMeta attribute) (exatomic.nbo.inputs.Input property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute) BasisFunctions (class in exatomic.algorithms.basis) BasisSet (class in exatomic.core.basis) BasisSetNotFoundError BasisSetOrder (class in exatomic.core.basis) bond_r (exatomic.widgets.widget_base.UniverseScene attribute) bonded (exatomic.core.two.AtomTwo property)

C

cameras (exatomic.widgets.widget_base.ExatomicScene attribute) car2sph() (in module exatomic.algorithms.basis) car2sph_scaled() (in module exatomic.algorithms.car2sph) cardinal_groupby() (exatomic.exa.core.container.Container method) (exatomic.exa.core.numerical.BaseDataFrame method) cart_basis_set_order (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) cart_momatrix (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) cartesian_ordering_function() (in module exatomic.nwchem.basis) caspt2_energy (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) center() (exatomic.core.atom.Atom method) check_key() (in module exatomic.exa.core.numerical) choose() (in module exatomic.algorithms.numerical) ClassificationError classify() (exatomic.core.molecule.Molecule method) clear (exatomic.widgets.widget_base.ExatomicScene attribute) clear_selected (exatomic.widgets.widget_base.UniverseScene attribute) columns (exatomic.widgets.widget_df.DFBox attribute) combine_curvature() (in module exatomic.algorithms.delocalization) compare_fields() (in module exatomic.algorithms.orbital_util) compute_angles_out_of_core() (in module exatomic.algorithms.angles) compute_atom_count() (exatomic.core.universe.Universe method) compute_atom_two() (exatomic.core.universe.Universe method) (in module exatomic.core.two) compute_atom_two_out_of_core() (in module exatomic.core.two) compute_basis_dims() (exatomic.core.universe.Universe method) compute_basis_functions() (exatomic.core.universe.Universe method) compute_bond_count() (exatomic.core.universe.Universe method) compute_bonds() (exatomic.core.universe.Universe method) compute_cell_magnitudes() (exatomic.core.frame.Frame method) compute_curvature() (in module exatomic.algorithms.delocalization) compute_dv() (exatomic.core.field.AtomicField method) compute_final() (exatomic.core.field.AtomicField method) compute_frame() (exatomic.core.universe.Universe method) (in module exatomic.core.frame) compute_frame_from_atom() (in module exatomic.core.frame) compute_molecule() (exatomic.core.universe.Universe method) (in module exatomic.core.molecule) compute_molecule_com() (exatomic.core.universe.Universe method) (in module exatomic.core.molecule)

compute_molecule_count() (exatomic.core.universe.Universe method) (in module exatomic.core.molecule) compute_molecule_two() (in module exatomic.core.two) compute_pdist() (in module exatomic.core.two) compute_pdist_nv() (in module exatomic.core.two) compute_pdist_ortho() (in module exatomic.core.two) compute_pdist_ortho_nv() (in module exatomic.core.two) compute_uncontracted_basis_set_order() (exatomic.core.universe.Universe method) (in module exatomic.algorithms.basis) compute_unit_atom() (exatomic.core.universe.Universe method) compute_visual_atom() (exatomic.core.universe.Universe method) concat() (exatomic.exa.core.container.Container method) (in module exatomic.core.universe) Constant (class in exatomic.exa.util.constants) (class in exatomic.util.constants) construct_fdx() (in module exatomic.qe.cp.dynamics) cont_axis (exatomic.widgets.widget_base.UniverseScene attribute) cont_lim (exatomic.widgets.widget_base.UniverseScene attribute) cont_num (exatomic.widgets.widget_base.UniverseScene attribute) cont_show (exatomic.widgets.widget_base.UniverseScene attribute) cont_val (exatomic.widgets.widget_base.UniverseScene attribute) Container (class in exatomic.exa.core.container) contribution (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) contributions() (exatomic.core.orbital.MOMatrix method) Conversion (class in exatomic.util.conversions) convert_bytes() (in module exatomic.exa.util.utility) copy() (exatomic.exa.core.container.Container method) (exatomic.exa.core.numerical.DataFrame method) (exatomic.exa.core.numerical.Field method) (exatomic.exa.core.numerical.Series method) create_property() (exatomic.exa.core.container.TypedMeta static method) Cube (class in exatomic.interfaces.cube) cur_frame (exatomic.widgets.widget_df.DFBox attribute) current_basis_set_order (exatomic.core.universe.Universe property) current_momatrix (exatomic.core.universe.Universe property) cursor (exatomic.exa.core.editor.Editor attribute)

D

DataFrame (class in exatomic.exa.core.numerical) datetime_header() (in module exatomic.exa.util.utility) deactivate() (exatomic.widgets.widget_utils.Folder method) deduplicate_basis_sets() (in module exatomic.core.basis) delete_lines() (exatomic.exa.core.editor.Editor method) DemoContainer (class in exatomic.widgets.widget) DemoUniverse (class in exatomic.widgets.widget) density (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) density_as_square() (in module exatomic.algorithms.numerical)

density_from_momatrix() (in module exatomic.algorithms.numerical) DensityMatrix (class in exatomic.core.orbital) description (exatomic.exa.core.editor.Editor attribute) dfac21() (in module exatomic.algorithms.numerical) DFBox (class in exatomic.widgets.widget_df) diatomic() (in module exatomic.util.builder) dict_to_string() (in module exatomic.formula) diff_expr() (in module exatomic.algorithms.basis) displacement() (exatomic.core.atom.Frequency method) display_side_by_side() (in module exatomic.base)

E

Ecce (class in exatomic.nwchem.output) Editor (class in exatomic.adf.editor) (class in exatomic.core.editor) (class in exatomic.exa.core.editor) (class in exatomic.gaussian.editor) (class in exatomic.molcas.editor) (class in exatomic.nbo.editor) (class in exatomic.nwchem.editor) (class in exatomic.qchem.editor) einstein_relation() (in module exatomic.algorithms.diffusion) elec_dipole (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) elec_quadrupole (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) electric_dipole (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) Element (class in exatomic.exa.util.isotopes) enum_shell() (exatomic.algorithms.basis.BasisFunctions method) enumerate_shells() (exatomic.core.universe.Universe method) evaluate() (exatomic.algorithms.basis.BasisFunctions method) evaluate_diff() (exatomic.algorithms.basis.BasisFunctions method) evaluate_expr() (in module exatomic.algorithms.basis) ExaException exatomic module exatomic.adf module exatomic.adf.adf module exatomic.adf.adf.adf module exatomic.adf.adf.geometry module exatomic.adf.adf.output module exatomic.adf.adf.scf module exatomic.adf.dirac module exatomic.adf.dirac.dirac module exatomic.adf.editor module exatomic.adf.inputs module exatomic.adf.nmr module exatomic.adf.nmr.output module exatomic.adf.output module exatomic.adf.tape21 module exatomic.algorithms module exatomic.algorithms.angles module exatomic.algorithms.basis module exatomic.algorithms.car2sph module exatomic.algorithms.delocalization module exatomic.algorithms.diffusion module exatomic.algorithms.displacement module exatomic.algorithms.distance module exatomic.algorithms.geometry module exatomic.algorithms.harmonics module exatomic.algorithms.indexing module exatomic.algorithms.interpolation module exatomic.algorithms.neighbors module exatomic.algorithms.numerical module exatomic.algorithms.orbital module exatomic.algorithms.orbital_util module exatomic.algorithms.overlap module exatomic.algorithms.packing module exatomic.algorithms.pcf module exatomic.base module exatomic.core module exatomic.core.atom module exatomic.core.basis module exatomic.core.editor module exatomic.core.error module exatomic.core.field module exatomic.core.frame module exatomic.core.gradient module exatomic.core.matrices module exatomic.core.molecule module exatomic.core.orbital module exatomic.core.tensor module exatomic.core.two module exatomic.core.universe module exatomic.exa module exatomic.exa.core module exatomic.exa.core.container module exatomic.exa.core.editor module exatomic.exa.core.error module exatomic.exa.core.numerical module exatomic.exa.static module exatomic.exa.typed module exatomic.exa.util module exatomic.exa.util.constants module exatomic.exa.util.io module

exatomic.exa.util.isotopes module exatomic.exa.util.mpl module exatomic.exa.util.nbvars module exatomic.exa.util.units module exatomic.exa.util.utility module exatomic.formula module exatomic.gaussian module exatomic.gaussian.editor module exatomic.gaussian.inputs module exatomic.gaussian.output module exatomic.interfaces module exatomic.interfaces.cclib module exatomic.interfaces.cube module exatomic.interfaces.pdb module exatomic.interfaces.xyz module exatomic.molcas module exatomic.molcas.editor module exatomic.molcas.inputs module exatomic.molcas.output module exatomic.mpl module exatomic.nbo module exatomic.nbo.editor module exatomic.nbo.inputs module exatomic.nbo.output module exatomic.nwchem module exatomic.nwchem.basis module exatomic.nwchem.editor module exatomic.nwchem.inputs module exatomic.nwchem.output module exatomic.plotter module exatomic.plotter.plot module exatomic.qchem module exatomic.qchem.editor module exatomic.qchem.inputs module exatomic.qchem.output module exatomic.qe module exatomic.qe.core module exatomic.qe.core.atomic_positions module exatomic.qe.core.base module exatomic.qe.cp module exatomic.qe.cp.dynamics module exatomic.qe.psp module exatomic.qe.psp.jobfile module exatomic.qe.psp.upf module exatomic.qe.pw module exatomic.qe.pw.classes module exatomic.qe.pw.composer module exatomic.qe.pw.footer module exatomic.qe.pw.header module exatomic.qe.pw.input module exatomic.qe.pw.output module exatomic.qe.pw.parsers module exatomic.qe.pw.scf module exatomic.qe.types module exatomic.static module exatomic.util module exatomic.util.builder module exatomic.util.constants module exatomic.util.conversions module exatomic.widgets module exatomic.widgets.traits module exatomic.widgets.widget module exatomic.widgets.widget_base module exatomic.widgets.widget_df module exatomic.widgets.widget_utils module ExatomicBox (class in exatomic.widgets.widget_base) ExatomicScene (class in exatomic.widgets.widget_base) Excitation (class in exatomic.core.orbital) excitation (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute)

F

fac() (in module exatomic.algorithms.numerical) fac2() (in module exatomic.algorithms.numerical) Fchk (class in exatomic.gaussian.output) Field (class in exatomic.exa.core.numerical) field (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.interfaces.cube.Cube property) (exatomic.interfaces.cube.Meta attribute) (exatomic.widgets.widget_base.ExatomicScene attribute) (exatomic.widgets.widget_base.TensorScene attribute) Field3D (class in exatomic.exa.core.numerical) field_fx (exatomic.widgets.widget_base.ExatomicScene attribute) field_fy (exatomic.widgets.widget_base.ExatomicScene attribute) field_fz (exatomic.widgets.widget_base.ExatomicScene attribute) field_i (exatomic.widgets.widget_base.UniverseScene attribute) field_idx (exatomic.widgets.widget_base.UniverseScene attribute) field_iso (exatomic.widgets.widget_base.ExatomicScene attribute) (exatomic.widgets.widget_base.UniverseScene attribute) field_kind (exatomic.widgets.widget_base.ExatomicScene attribute) field_ml (exatomic.widgets.widget_base.ExatomicScene attribute) field_neg (exatomic.widgets.widget_base.ExatomicScene attribute) field_nx (exatomic.widgets.widget_base.ExatomicScene attribute) field_ny (exatomic.widgets.widget_base.ExatomicScene attribute) field_nz (exatomic.widgets.widget_base.ExatomicScene attribute) field_o (exatomic.widgets.widget_base.ExatomicScene attribute) field_ox (exatomic.widgets.widget_base.ExatomicScene attribute) field_oy (exatomic.widgets.widget_base.ExatomicScene attribute) field_oz (exatomic.widgets.widget_base.ExatomicScene attribute) field_p (exatomic.widgets.widget_base.UniverseScene attribute) field_pos (exatomic.widgets.widget_base.ExatomicScene attribute) field_show (exatomic.widgets.widget_base.UniverseScene attribute) field_traits() (in module exatomic.widgets.traits) field_v (exatomic.widgets.widget_base.UniverseScene attribute) fill_idx (exatomic.widgets.widget_base.UniverseScene attribute) find() (exatomic.exa.core.editor.Editor method) find_next() (exatomic.exa.core.editor.Editor method) Folder (class in exatomic.widgets.widget_utils) format() (exatomic.exa.core.editor.Editor method) Frame (class in exatomic.core.frame) frame (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.interfaces.cube.Cube property) (exatomic.interfaces.cube.Meta attribute) (exatomic.interfaces.xyz.Meta attribute) (exatomic.interfaces.xyz.XYZ property) (exatomic.nbo.inputs.InpMeta attribute) (exatomic.nbo.inputs.Input property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute)

frame__a (exatomic.widgets.widget_base.UniverseScene attribute) frame_idx (exatomic.widgets.widget_base.UniverseScene attribute) frame_traits() (in module exatomic.widgets.traits) FreeBoundaryUniverseError Frequency (class in exatomic.core.atom) frequency (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.adf.tape21.Tape21 property) (exatomic.adf.tape21.Tape21Meta attribute) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute) frequency_ext (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) from_cclib() (exatomic.core.universe.Universe class method) from_column() (exatomic.core.basis.Overlap class method) from_energies() (exatomic.core.orbital.Orbital class method) from_file() (exatomic.core.tensor.Tensor class method) (exatomic.exa.core.editor.Editor class method) from_hdf() (exatomic.exa.core.container.Container class method) from_momatrix() (exatomic.core.orbital.DensityMatrix class method) from_occupation_vector() (exatomic.core.orbital.Orbital class method) from_small_molecule_data() (exatomic.core.atom.Atom class method) from_square() (exatomic.core.basis.Overlap class method) from_stream() (exatomic.exa.core.editor.Editor class method) from_string() (exatomic.exa.core.editor.Editor class method) from_universe() (exatomic.core.atom.UnitAtom class method) (exatomic.core.atom.VisualAtom class method) (exatomic.core.orbital.DensityMatrix class method) (exatomic.core.orbital.Excitation class method) (exatomic.gaussian.inputs.Input class method) (exatomic.interfaces.cube.Cube class method) (exatomic.interfaces.xyz.XYZ class method) (exatomic.nbo.inputs.Input class method) (exatomic.nwchem.inputs.Input class method) func_log() (in module exatomic) functional_inputs() (in module exatomic.gaussian.inputs) functional_results() (in module exatomic.algorithms.delocalization) functions() (exatomic.core.basis.BasisSet method) functions_by_shell() (exatomic.core.basis.BasisSet method)

G

GauMeta (class in exatomic.gaussian.output) gaussian() (in module exatomic.plotter.plot) gen_enum_cartesian() (in module exatomic.algorithms.basis) geom (exatomic.widgets.widget_base.ExatomicScene attribute) (exatomic.widgets.widget_base.TensorScene attribute) get_atom_count() (exatomic.core.molecule.Molecule method) get_atom_labels() (exatomic.core.atom.Atom method) get_element_masses() (exatomic.core.atom.Atom method) get_formula() (exatomic.core.molecule.Molecule method) get_internal_modules() (in module exatomic.exa.util.utility) get_length() (in module exatomic.qe.types) get_orbital() (exatomic.core.orbital.Orbital method) Gradient (class in exatomic.core.gradient) gradient (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.adf.tape21.Tape21 property) (exatomic.adf.tape21.Tape21Meta attribute) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property)

gui_field_widgets() (in module exatomic.widgets.widget_utils) GUIBox (class in exatomic.widgets.widget_utils)

H

h (exatomic.widgets.widget_base.ExatomicScene attribute) HDF (class in exatomic.molcas.output) HDFMeta (class in exatomic.molcas.output)

head() (exatomic.exa.core.editor.Editor method) hessian (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property)

I

imgname (exatomic.widgets.widget_base.ExatomicScene attribute) index (exatomic.widgets.widget_base.ExatomicScene attribute) indexes (exatomic.widgets.widget_df.DFBox attribute) info() (exatomic.exa.core.container.Container method) InpMeta (class in exatomic.nbo.inputs) Input (class in exatomic.gaussian.inputs) (class in exatomic.nbo.inputs) (class in exatomic.nwchem.inputs) InputError InputGenerator (class in exatomic.molcas.inputs)

insert() (exatomic.exa.core.editor.Editor method) (exatomic.widgets.widget_utils.Folder method) integrals() (exatomic.algorithms.basis.BasisFunctions method) integrate() (exatomic.core.field.AtomicField method) interpolate_j2() (in module exatomic.algorithms.interpolation) ir_spectra() (exatomic.core.atom.Frequency method) is_periodic() (exatomic.core.frame.Frame method) is_variable_cell() (exatomic.core.frame.Frame method) Isotope (class in exatomic.exa.util.isotopes) isotopes (exatomic.exa.util.isotopes.Element property)

J

j_coupling (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.adf.tape21.Tape21 property) (exatomic.adf.tape21.Tape21Meta attribute)

JCoupling (class in exatomic.core.tensor)

L

last_frame (exatomic.core.atom.Atom property) lines_from_file() (in module exatomic.exa.core.editor) lines_from_stream() (in module exatomic.exa.core.editor) lines_from_string() (in module exatomic.exa.core.editor) linked (exatomic.widgets.widget_base.ExatomicBox attribute) list_resources() (in module exatomic.base)

lmax (exatomic.core.basis.BasisSet property) load() (exatomic.exa.core.container.Container class method) log (exatomic.exa.core.container.Container property) (exatomic.exa.core.editor.Editor property) (exatomic.exa.core.numerical.Numerical property) lorentzian() (in module exatomic.plotter.plot)

M

mag_dipole (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) magnetic_dipole (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) make_fps() (in module exatomic.algorithms.orbital_util) make_small_molecule() (in module exatomic.algorithms.geometry) mass (exatomic.formula.SimpleFormula property) memory_usage() (exatomic.exa.core.container.Container method) (exatomic.exa.core.numerical.Field method) merge() (exatomic.core.matrices.Triangle method) Meta (class in exatomic.core.universe) (class in exatomic.interfaces.cube) (class in exatomic.interfaces.xyz) meta (exatomic.exa.core.editor.Editor attribute) MissingSection mkp() (in module exatomic.exa.util.utility) module exatomic exatomic.adf exatomic.adf.adf exatomic.adf.adf.adf exatomic.adf.adf.geometry exatomic.adf.adf.output exatomic.adf.adf.scf exatomic.adf.dirac exatomic.adf.dirac.dirac exatomic.adf.editor exatomic.adf.inputs exatomic.adf.nmr exatomic.adf.nmr.output exatomic.adf.output exatomic.adf.tape21 exatomic.algorithms exatomic.algorithms.angles exatomic.algorithms.basis exatomic.algorithms.car2sph exatomic.algorithms.delocalization exatomic.algorithms.diffusion exatomic.algorithms.displacement exatomic.algorithms.distance exatomic.algorithms.geometry exatomic.algorithms.harmonics exatomic.algorithms.indexing exatomic.algorithms.interpolation exatomic.algorithms.neighbors exatomic.algorithms.numerical exatomic.algorithms.orbital exatomic.algorithms.orbital_util exatomic.algorithms.overlap exatomic.algorithms.packing exatomic.algorithms.pcf exatomic.base exatomic.core exatomic.core.atom exatomic.core.basis exatomic.core.editor exatomic.core.error exatomic.core.field exatomic.core.frame exatomic.core.gradient exatomic.core.matrices exatomic.core.molecule exatomic.core.orbital exatomic.core.tensor exatomic.core.two exatomic.core.universe exatomic.exa exatomic.exa.core exatomic.exa.core.container exatomic.exa.core.editor exatomic.exa.core.error exatomic.exa.core.numerical exatomic.exa.static exatomic.exa.typed exatomic.exa.util exatomic.exa.util.constants exatomic.exa.util.io exatomic.exa.util.isotopes exatomic.exa.util.mpl exatomic.exa.util.nbvars exatomic.exa.util.units exatomic.exa.util.utility exatomic.formula exatomic.gaussian exatomic.gaussian.editor exatomic.gaussian.inputs exatomic.gaussian.output exatomic.interfaces exatomic.interfaces.cclib exatomic.interfaces.cube exatomic.interfaces.pdb exatomic.interfaces.xyz exatomic.molcas exatomic.molcas.editor exatomic.molcas.inputs exatomic.molcas.output exatomic.mpl exatomic.nbo exatomic.nbo.editor exatomic.nbo.inputs exatomic.nbo.output exatomic.nwchem exatomic.nwchem.basis exatomic.nwchem.editor exatomic.nwchem.inputs exatomic.nwchem.output exatomic.plotter exatomic.plotter.plot exatomic.qchem exatomic.qchem.editor exatomic.qchem.inputs exatomic.qchem.output exatomic.qe exatomic.qe.core exatomic.qe.core.atomic_positions exatomic.qe.core.base exatomic.qe.cp exatomic.qe.cp.dynamics exatomic.qe.psp exatomic.qe.psp.jobfile exatomic.qe.psp.upf exatomic.qe.pw exatomic.qe.pw.classes exatomic.qe.pw.composer exatomic.qe.pw.footer exatomic.qe.pw.header exatomic.qe.pw.input exatomic.qe.pw.output exatomic.qe.pw.parsers exatomic.qe.pw.scf exatomic.qe.types exatomic.static exatomic.util exatomic.util.builder exatomic.util.constants exatomic.util.conversions exatomic.widgets exatomic.widgets.traits exatomic.widgets.widget exatomic.widgets.widget_base exatomic.widgets.widget_df exatomic.widgets.widget_utils

Molecule (class in exatomic.core.molecule) molecule (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) molecule_two (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) MoleculeTwo (class in exatomic.core.two) MOMatrix (class in exatomic.core.orbital) (class in exatomic.nbo.output) momatrix (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.HDF property) (exatomic.molcas.output.HDFMeta attribute) (exatomic.molcas.output.Orb property) (exatomic.molcas.output.OrbMeta attribute) (exatomic.nbo.inputs.InpMeta attribute) (exatomic.nbo.inputs.Input property) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute) momatrix_as_square() (in module exatomic.algorithms.numerical) monatomic() (in module exatomic.util.builder) move_to_end() (exatomic.widgets.widget_utils.Folder method) multipole (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute)

N

name (exatomic.exa.core.editor.Editor attribute) natural_occ (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) network() (exatomic.exa.core.container.Container method) nfields (exatomic.core.field.AtomicField property) nframes (exatomic.core.atom.Atom property) NMR (class in exatomic.adf.output) nmr_shielding (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.adf.tape21.Tape21 property) (exatomic.adf.tape21.Tape21Meta attribute) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property)

nmr_spectra() (exatomic.core.tensor.NMRShielding method) NMRShielding (class in exatomic.core.tensor) nrpint (exatomic.exa.core.editor.Editor attribute) numbafy() (in module exatomic.exa.util.nbvars) Numerical (class in exatomic.exa.core.numerical) numerical_grid_from_field_params() (in module exatomic.algorithms.orbital_util)

O

Orb (class in exatomic.molcas.output) Orbital (class in exatomic.core.orbital) orbital (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.HDF property) (exatomic.molcas.output.HDFMeta attribute) (exatomic.molcas.output.Orb property) (exatomic.molcas.output.OrbMeta attribute) (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute) OrbMeta (class in exatomic.molcas.output)

orthorhombic (exatomic.core.universe.Universe property) orthorhombic() (exatomic.core.frame.Frame method) OutMeta (class in exatomic.adf.output) (class in exatomic.molcas.output) (class in exatomic.nwchem.output) Output (class in exatomic.adf.output) (class in exatomic.gaussian.output) (class in exatomic.molcas.output) (class in exatomic.nbo.output) (class in exatomic.nwchem.output) (class in exatomic.qchem.output) Overlap (class in exatomic.core.basis) overlap (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe attribute) (exatomic.core.universe.Universe property) (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) (exatomic.molcas.output.HDF property) (exatomic.molcas.output.HDFMeta attribute) (exatomic.nbo.inputs.InpMeta attribute) (exatomic.nbo.inputs.Input property) (exatomic.qchem.output.Output property) (exatomic.qchem.output.QMeta attribute)

P

pandas_dataframe() (exatomic.exa.core.editor.Editor method) parse() (exatomic.nwchem.output.Ecce method) parse_atom() (exatomic.adf.output.ADF method) (exatomic.adf.output.AMS method) (exatomic.adf.output.NMR method) (exatomic.adf.output.Output method) (exatomic.adf.tape21.Tape21 method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.interfaces.cube.Cube method) (exatomic.interfaces.xyz.XYZ method) (exatomic.molcas.output.HDF method) (exatomic.molcas.output.Output method) (exatomic.nbo.inputs.Input method) (exatomic.nwchem.output.Output method) (exatomic.qchem.output.Output method) parse_basis_set() (exatomic.adf.output.ADF method) (exatomic.adf.output.Output method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.molcas.output.HDF method) (exatomic.molcas.output.Output method) (exatomic.nwchem.output.Output method) parse_basis_set_order() (exatomic.adf.output.ADF method) (exatomic.adf.output.Output method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.molcas.output.HDF method) (exatomic.molcas.output.Output method) (exatomic.nbo.inputs.Input method) (exatomic.nwchem.output.Output method) parse_caspt2_energy() (exatomic.molcas.output.Output method) parse_ccobj_atom() (in module exatomic.interfaces.cclib) parse_ccobj_basis_set_order() (in module exatomic.interfaces.cclib) parse_ccobj_gaussian_basis_set() (in module exatomic.interfaces.cclib) parse_ccobj_momatrix() (in module exatomic.interfaces.cclib) parse_ccobj_orbital() (in module exatomic.interfaces.cclib) parse_contribution() (exatomic.adf.output.ADF method) (exatomic.adf.output.Output method) parse_elec_dipole() (exatomic.gaussian.output.Output method) parse_elec_quadrupole() (exatomic.gaussian.output.Output method) parse_electric_dipole() (exatomic.adf.output.AMS method) (exatomic.adf.output.Output method) parse_evp() (in module exatomic.qe.cp.dynamics) parse_excitation() (exatomic.adf.output.ADF method) (exatomic.adf.output.AMS method) (exatomic.adf.output.Output method) (exatomic.gaussian.output.Output method) parse_field() (exatomic.interfaces.cube.Cube method) parse_frame() (exatomic.core.editor.Editor method) (exatomic.gaussian.output.Output method) (exatomic.interfaces.xyz.XYZ method) (exatomic.nwchem.output.Output method) parse_frequency() (exatomic.adf.output.ADF method) (exatomic.adf.output.AMS method) (exatomic.adf.output.Output method) (exatomic.adf.tape21.Tape21 method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.molcas.output.Output method) (exatomic.nwchem.output.Output method) parse_gradient() (exatomic.adf.output.ADF method) (exatomic.adf.output.AMS method) (exatomic.adf.output.Output method) (exatomic.adf.tape21.Tape21 method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.molcas.output.Output method) (exatomic.nwchem.output.Output method)

parse_hessian() (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) parse_j_coupling() (exatomic.adf.output.NMR method) (exatomic.adf.output.Output method) (exatomic.adf.tape21.Tape21 method) parse_mag_dipole() (exatomic.gaussian.output.Output method) parse_magnetic_dipole() (exatomic.adf.output.AMS method) (exatomic.adf.output.Output method) parse_molcas() (in module exatomic.molcas.output) parse_momatrix() (exatomic.adf.output.ADF method) (exatomic.adf.output.Output method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.molcas.output.HDF method) (exatomic.molcas.output.Orb method) (exatomic.nbo.inputs.Input method) (exatomic.nbo.output.MOMatrix method) (exatomic.nwchem.output.Ecce method) (exatomic.nwchem.output.Output method) parse_multipole() (exatomic.gaussian.output.Output method) parse_nao() (exatomic.nbo.output.Output method) parse_natural_occ() (exatomic.molcas.output.Output method) parse_nbo() (exatomic.nbo.output.Output method) parse_nlmo() (exatomic.nbo.output.Output method) parse_nmr_shielding() (exatomic.adf.output.NMR method) (exatomic.adf.output.Output method) (exatomic.adf.tape21.Tape21 method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) parse_nwchem() (in module exatomic.nwchem.output) parse_orbital() (exatomic.adf.output.ADF method) (exatomic.adf.output.Output method) (exatomic.gaussian.output.Fchk method) (exatomic.gaussian.output.Output method) (exatomic.molcas.output.HDF method) (exatomic.nwchem.output.Output method) parse_overlap() (exatomic.gaussian.output.Output method) (exatomic.molcas.output.HDF method) (exatomic.nbo.inputs.Input method) parse_roa() (exatomic.nwchem.output.Output method) parse_sf_angmom() (exatomic.molcas.output.Output method) parse_sf_dipole_moment() (exatomic.molcas.output.Output method) parse_sf_energy() (exatomic.molcas.output.Output method) parse_sf_oscillator() (exatomic.molcas.output.Output method) parse_sf_quadrupole_moment() (exatomic.molcas.output.Output method) parse_so_energy() (exatomic.molcas.output.Output method) parse_so_oscillator() (exatomic.molcas.output.Output method) parse_spec_prop() (exatomic.gaussian.output.Output method) parse_sphr_momatrix() (exatomic.adf.output.ADF method) (exatomic.adf.output.Output method) parse_symbols_from_input() (in module exatomic.qe.cp.dynamics) parse_xyz() (in module exatomic.qe.cp.dynamics) pdist() (in module exatomic.algorithms.distance) pdist_nv() (in module exatomic.algorithms.distance) pdist_ortho() (in module exatomic.algorithms.distance) pdist_ortho_nv() (in module exatomic.algorithms.distance) periodic (exatomic.core.universe.Universe property) periodic_nearest_neighbors_by_atom() (in module exatomic.algorithms.neighbors) periodic_nearest_neighbors_by_atom_large() (in module exatomic.algorithms.neighbors) PeriodicUniverseError Plot (class in exatomic.plotter.plot) plot_energy() (in module exatomic.algorithms.delocalization) Polarizability (class in exatomic.core.tensor) pop() (exatomic.widgets.widget_utils.Folder method) prepend() (exatomic.exa.core.editor.Editor method) primitives() (exatomic.core.basis.BasisSet method) primitives_by_shell() (exatomic.core.basis.BasisSet method) projected_atom (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) ProjectedAtom (class in exatomic.core.atom)

Q

QMeta (class in exatomic.qchem.output)

R

radial_pair_correlation() (in module exatomic.algorithms.pcf) radial_pcf_out_of_core() (in module exatomic.algorithms.pcf) radius (exatomic.exa.util.isotopes.Element property) (exatomic.exa.util.isotopes.Isotope property) read_tarball() (in module exatomic.exa.util.io) regex() (exatomic.exa.core.editor.Editor method) remove_blank_lines() (exatomic.exa.core.editor.Editor method) reorder_matrix() (in module exatomic.algorithms.numerical) replace() (exatomic.exa.core.editor.Editor method) RequiredColumnError

resource() (in module exatomic.base) (in module exatomic.exa.static) rmass_cart() (exatomic.adf.tape21.Tape21 static method) rmass_mwc() (exatomic.adf.tape21.Tape21 static method) rms_grad (exatomic.core.gradient.Gradient property) roa (exatomic.nwchem.output.Ecce property) (exatomic.nwchem.output.OutMeta attribute) (exatomic.nwchem.output.Output property) rotate() (exatomic.core.atom.Atom method) (exatomic.core.field.AtomicField method)

S

save (exatomic.widgets.widget_base.ExatomicScene attribute) save() (exatomic.exa.core.container.Container method) save_cam (exatomic.widgets.widget_base.ExatomicScene attribute) savedir (exatomic.widgets.widget_base.ExatomicScene attribute) scale (exatomic.widgets.widget_base.TensorScene attribute) (exatomic.widgets.widget_base.UniverseScene attribute) sdist() (in module exatomic.algorithms.numerical) seaborn_set() (in module exatomic.exa.util.mpl) selected (exatomic.widgets.widget_base.UniverseScene attribute) Series (class in exatomic.exa.core.numerical) set_xrange() (exatomic.plotter.plot.Plot method) set_yrange() (exatomic.plotter.plot.Plot method) sf_angmom (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) sf_dipole_moment (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) sf_energy (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) sf_oscillator (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) sf_quadrupole_moment (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) shells() (exatomic.core.basis.BasisSet method) show() (exatomic.plotter.plot.Plot method) SimpleFormula (class in exatomic.formula) slice_cardinal() (exatomic.exa.core.container.Container method) (exatomic.exa.core.numerical.BaseDataFrame method) slice_naive() (exatomic.exa.core.container.Container method) (exatomic.exa.core.numerical.Field method) (exatomic.exa.core.numerical.Numerical method) so_energy (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property)

so_oscillator (exatomic.molcas.output.OutMeta attribute) (exatomic.molcas.output.Output property) solid_harmonics() (in module exatomic.algorithms.basis) (in module exatomic.algorithms.harmonics) SolidHarmonics (class in exatomic.algorithms.harmonics) SparseDataFrame (class in exatomic.exa.core.numerical) spec_prop (exatomic.gaussian.output.Fchk property) (exatomic.gaussian.output.GauMeta attribute) (exatomic.gaussian.output.Output property) spherical_by_shell() (exatomic.core.basis.BasisSet method) spherical_harmonics() (in module exatomic.algorithms.basis) spherical_ordering_function() (in module exatomic.nwchem.basis) sphr_basis_set_order (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) sphr_momatrix (exatomic.adf.output.ADF property) (exatomic.adf.output.AMS property) (exatomic.adf.output.NMR property) (exatomic.adf.output.OutMeta attribute) (exatomic.adf.output.Output property) (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) square() (exatomic.core.basis.Overlap method) (exatomic.core.orbital.DensityMatrix method) (exatomic.core.orbital.MOMatrix method) start (exatomic.widgets.widget_df.DFBox attribute) starts_count() (in module exatomic.algorithms.indexing) starts_counts() (in module exatomic.algorithms.indexing) staticdir() (in module exatomic.base) (in module exatomic.exa.static) stats (exatomic.core.gradient.Gradient property) string_to_dict() (in module exatomic.formula) StringFormulaError sym2isomass() (in module exatomic.base)

T

tail() (exatomic.exa.core.editor.Editor method) Tape21 (class in exatomic.adf.tape21) Tape21Meta (class in exatomic.adf.tape21) tdx (exatomic.widgets.widget_base.TensorScene attribute) tens (exatomic.widgets.widget_base.TensorScene attribute) (exatomic.widgets.widget_base.UniverseScene attribute) Tensor (class in exatomic.core.tensor) tensor (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) tensor_d (exatomic.widgets.widget_base.UniverseScene attribute) tensor_traits() (in module exatomic.widgets.traits) TensorContainer (class in exatomic.widgets.widget) TensorScene (class in exatomic.widgets.widget_base) tidx (exatomic.widgets.widget_base.UniverseScene attribute) to_hdf() (exatomic.exa.core.container.Container method) to_py_type() (in module exatomic.qe.types) to_qe_type() (in module exatomic.qe.types) to_stream() (exatomic.exa.core.editor.Editor method) to_universe() (exatomic.core.editor.Editor method) (exatomic.molcas.editor.Editor method) (exatomic.molcas.output.HDF method) (exatomic.molcas.output.Orb method) (exatomic.nbo.output.MOMatrix method) (exatomic.nbo.output.Output method)

to_xyz() (exatomic.core.atom.Atom method) translate() (exatomic.core.atom.Atom method) Triangle (class in exatomic.core.matrices) tuning_inputs() (in module exatomic.gaussian.inputs) (in module exatomic.nwchem.inputs) tuning_results() (in module exatomic.algorithms.delocalization) two_b0 (exatomic.widgets.widget_base.UniverseScene attribute) two_b1 (exatomic.widgets.widget_base.UniverseScene attribute) two_traits() (in module exatomic.widgets.traits) txx (exatomic.widgets.widget_base.TensorScene attribute) txy (exatomic.widgets.widget_base.TensorScene attribute) txz (exatomic.widgets.widget_base.TensorScene attribute) Typed (class in exatomic.exa.typed) typed() (in module exatomic.exa.typed) TypedClass (class in exatomic.exa.typed) TypedMeta (class in exatomic.exa.core.container) (class in exatomic.exa.typed) tyx (exatomic.widgets.widget_base.TensorScene attribute) tyy (exatomic.widgets.widget_base.TensorScene attribute) tyz (exatomic.widgets.widget_base.TensorScene attribute) tzx (exatomic.widgets.widget_base.TensorScene attribute) tzy (exatomic.widgets.widget_base.TensorScene attribute) tzz (exatomic.widgets.widget_base.TensorScene attribute)

U

uncontracted_basis_set_order (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) uni (exatomic.widgets.widget_base.ExatomicScene attribute) uni_from_cubes() (in module exatomic.interfaces.cube) uni_traits() (in module exatomic.widgets.traits) unique_atoms (exatomic.core.atom.Atom property) Unit (class in exatomic.exa.util.units)

unit_atom (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) UnitAtom (class in exatomic.core.atom) Universe (class in exatomic.core.universe) universe_from_cclib() (in module exatomic.interfaces.cclib) UniverseScene (class in exatomic.widgets.widget_base) UniverseWidget (class in exatomic.widgets.widget) update() (exatomic.widgets.widget_utils.Folder method)

V

values (exatomic.exa.util.units.Unit property) variables (exatomic.exa.core.editor.Editor property)

visual_atom (exatomic.core.universe.Meta attribute) (exatomic.core.universe.Universe property) VisualAtom (class in exatomic.core.atom)

W

w (exatomic.widgets.widget_base.ExatomicScene attribute) write() (exatomic.exa.core.editor.Editor method) (exatomic.interfaces.xyz.XYZ method)

write_cube() (exatomic.core.universe.Universe method) write_molcas_input() (in module exatomic.molcas.inputs)

X

XYZ (class in exatomic.interfaces.xyz)

Y

yield_typed() (in module exatomic.exa.typed)