{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# An Introduction to exatomic\n", "\n", "Exatomic is a package that facilitates data analysis for computational chemistry.\n", "\n", "Key features of exatomic include:\n", "- Parsing of quantum chemistry software output\n", "- Visualization of molecules, orbitals\n", "- Dataframe based data organization" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## [Basics of exatomic](./01_basics.ipynb)\n", "\n", "- Tutorial of basic usage and syntax\n", "- Demonstrates how to load/manipulate dataframe data" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## [XYZ Tutorial](./02_xyz.ipynb)\n", "\n", "- Load an XYZ trajectory\n", "- Visualize the structure\n", "- Examine basic data objects associated with/derived from the structure" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## [Visualization of Molecular Orbitals](./03_orbitals.ipynb)\n", "\n", "- Tutorial on parsing data from wave function theory software\n", "- Visualization of molecular orbitals\n", "- Computation of overlap, density matrix, and other manipulations stemming from the basis set, order, and coefficient matrix" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## [NWChem](./nwchem.ipynb)\n", "- [NWChem](https://github.com/nwchemgit/nwchem/wiki) is a computational chemistry software" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## [QE](./qe.ipynb)\n", "- [QE](https://www.quantum-espresso.org/) is primarily a solid state physics simulation software" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.4" } }, "nbformat": 4, "nbformat_minor": 4 }